#PBS -q huge
#PBS -l select=1:ncpus=8:mem=64gb
#PBS -l walltime=72:00:00


#activate conda env

cd /home/matwings/wyx/EVcouplings/plmc

export name1=AMIE_PSEAE
export name2=B3VI55_LIPST
export name3=BG_STRSQ
export name4=BLAT_ECOLX
export name5=GFP
export name6=KKA2_KLEPN
export name7=MTH3_HAEAESTABILIZED
export name8=P84126_THETH
export name9=RASH_HUMAN
export name10=TIM_SULSO
export name11=UBC9_HUMAN
export name12=WW

export inpath1=/home/matwings/wyx/EVcouplings/plmc/example/protein/$name1.a2m
export outpath1=/home/matwings/wyx/EVcouplings/plmc/example/protein/params/$name1.params

export inpath2=/home/matwings/wyx/EVcouplings/plmc/example/protein/$name2.a2m
export outpath2=/home/matwings/wyx/EVcouplings/plmc/example/protein/params/$name2.params

export inpath3=/home/matwings/wyx/EVcouplings/plmc/example/protein/$name3.a2m
export outpath3=/home/matwings/wyx/EVcouplings/plmc/example/protein/params/$name3.params

export inpath4=/home/matwings/wyx/EVcouplings/plmc/example/protein/$name4.a2m
export outpath4=/home/matwings/wyx/EVcouplings/plmc/example/protein/params/$name4.params

export inpath5=/home/matwings/wyx/EVcouplings/plmc/example/protein/$name5.a2m
export outpath5=/home/matwings/wyx/EVcouplings/plmc/example/protein/params/$name5.params

export inpath6=/home/matwings/wyx/EVcouplings/plmc/example/protein/$name6.a2m
export outpath6=/home/matwings/wyx/EVcouplings/plmc/example/protein/params/$name6.params

export inpath7=/home/matwings/wyx/EVcouplings/plmc/example/protein/$name7.a2m
export outpath7=/home/matwings/wyx/EVcouplings/plmc/example/protein/params/$name7.params

export inpath8=/home/matwings/wyx/EVcouplings/plmc/example/protein/$name8.a2m
export outpath8=/home/matwings/wyx/EVcouplings/plmc/example/protein/params/$name8.params

export inpath9=/home/matwings/wyx/EVcouplings/plmc/example/protein/$name9.a2m
export outpath9=/home/matwings/wyx/EVcouplings/plmc/example/protein/params/$name9.params

export inpath10=/home/matwings/wyx/EVcouplings/plmc/example/protein/$name10.a2m
export outpath10=/home/matwings/wyx/EVcouplings/plmc/example/protein/params/$name10.params

export inpath11=/home/matwings/wyx/EVcouplings/plmc/example/protein/$name11.a2m
export outpath11=/home/matwings/wyx/EVcouplings/plmc/example/protein/params/$name11.params

export inpath12=/home/matwings/wyx/EVcouplings/plmc/example/protein/$name12.a2m
export outpath12=/home/matwings/wyx/EVcouplings/plmc/example/protein/params/$name12.params

export PATH="/home/matwings/gejian/anaconda3/bin:$PATH"
source activate evc

bin/plmc -o $outpath1 -le 16.0 -lh 0.01 -m 100 -g -f DYR_ECOLI $inpath1
bin/plmc -o $outpath2 -le 16.0 -lh 0.01 -m 100 -g -f DYR_ECOLI $inpath2
bin/plmc -o $outpath3 -le 16.0 -lh 0.01 -m 100 -g -f DYR_ECOLI $inpath3
bin/plmc -o $outpath4 -le 16.0 -lh 0.01 -m 100 -g -f DYR_ECOLI $inpath4
bin/plmc -o $outpath5 -le 16.0 -lh 0.01 -m 100 -g -f DYR_ECOLI $inpath5
bin/plmc -o $outpath6 -le 16.0 -lh 0.01 -m 100 -g -f DYR_ECOLI $inpath6
bin/plmc -o $outpath7 -le 16.0 -lh 0.01 -m 100 -g -f DYR_ECOLI $inpath7
bin/plmc -o $outpath8 -le 16.0 -lh 0.01 -m 100 -g -f DYR_ECOLI $inpath8
bin/plmc -o $outpath9 -le 16.0 -lh 0.01 -m 100 -g -f DYR_ECOLI $inpath9
bin/plmc -o $outpath10 -le 16.0 -lh 0.01 -m 100 -g -f DYR_ECOLI $inpath10
bin/plmc -o $outpath11 -le 16.0 -lh 0.01 -m 100 -g -f DYR_ECOLI $inpath11
bin/plmc -o $outpath12 -le 16.0 -lh 0.01 -m 100 -g -f DYR_ECOLI $inpath12

